| name | Hub | image | date Ceased operations | date Commenced operations | IATA Code | ICAO Code | city Headquarters | administrative division Headquarters | country Headquarters | continent Headquarters | Country | continent | Parent | number of aircrafts | number of destinations | Website |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Air Greece | Heraklion International Airport | 1999 | 1994 | JG | AGJ | Heraklion | Crete | Greece | Europe | Greece | Europe | 5 | 12 | Website | ||
| Alexandair | Heraklion International Airport |  | 2004 | AXN | Athens | Attica | Greece | Europe | Greece | Europe | 2 | Website | ||||
| Sky Express (Greece) | Heraklion International Airport |  | 2005 | GQ | SEH | Heraklion | Crete | Greece | Europe | Greece | Europe | 8 | 24 | Website | ||
| Cretan Airlines | Heraklion International Airport |  | 1995 | 1993 | C5 | KRT | Heraklion | Crete | Greece | Europe | Greece | Europe | 3 | Website | ||
| Bluebird Airways | Heraklion International Airport | 2008 | BZ | BBG | Heraklion | Crete | Greece | Europe | Greece | Europe | 1 | 5 | Website |