| name | Hub | image | date Ceased operations | date Commenced operations | IATA Code | ICAO Code | city Headquarters | administrative division Headquarters | country Headquarters | continent Headquarters | Country | continent | Parent | number of aircrafts | number of destinations | Website |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Avies | Tallinn Airport |  | 2016 | 1991 | U3 | AIA | Tallinn | Harju | Estonia | Europe | Estonia | Europe | 11 | 12 | Website | |
| Enimex | 2008 | 1994 | ENI | Tallinn | Harju | Estonia | Europe | Estonia | Europe | Website | ||||||
| Estonian Air | Tallinn Airport |  | 08/11/2015 | 1991 | OV | ELL | Tallinn | Harju | Estonia | Europe | Estonia | Europe | 7 | 14 | Website | |
| SmartLynx Airlines Estonia | 2012 | MYX | Tallinn | Harju | Estonia | Europe | Estonia | Europe | 3 | Website | ||||||
| Flyest | 2015 | AEG | Tallinn | Harju | Estonia | Europe | Estonia | Europe | 1 | 3 | Website |