| name | image | type | Annual cargo tonnage (kg) | date completed | date Opened | city | administrative división | continent | Website | Country | waterbody | latitude (°) | longitude (°) | Map |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bekker Port |  | 562,331 | 1913 | Tallinn | Harju | Europe | website | Estonia | 59.4500007629 | 24.6666660309 | Map | |||
| Muuga Harbour |  | Cargo | 1986 | Maardu | Harju | Europe | website | Estonia | 59.4833335876 | 24.9500007629 | Map | |||
| Paldiski South Harbour |  | Cargo | 1994 | Paldiski | Harju | Europe | website | Estonia | 59.3333320618 | 24.0833339691 | Map | |||
| Port of Tallinn |  | Cargo | Tallinn | Harju | Europe | website | Estonia | Gulf of Finland | 59.4449240000 | 24.7608170000 | Map | |||
| Porto di Ringsu | Cargo | Ruhnu | Saare | Europe | website | Estonia | Gulf of Riga |